Showing : rlog transformation • reset
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deseq2: use blind=T or blind=F when find gene groups?
rlog transformation deseq2
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 20
6
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6
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8.4k
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DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
deseq2 vst rlog transformation
updated 6.0 years ago by ★ 13k • written 6.0 years ago by ▴ 20
0
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3
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3.6k
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Data normalization and transformation using DESeq2
deseq2 normalization rnaseq rlog transformation variancestabilizingtransformation
6.0 years ago chiara.facciotto • 0
2
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3
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1.5k
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Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
DESeq2 quality assesment vst rlog transformation
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 10
0
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15
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3.2k
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rlog not found
rlog rlog transformation
6.6 years ago crowsreign42 • 0
1
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2
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2.0k
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DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2 PCA rlog transformation biotype
6.6 years ago JoannaF ▴ 10
1
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1
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2.0k
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sample removal after clustering
deseq2 rlog transformation
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
2
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2
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5.0k
views
choosing the normalization method (rlog, variance stabilizing transformation)
variancestabilizingtransformation rlog transformation deseq2
updated 13 months ago by • 0 • written 7.0 years ago by ▴ 80
4
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7
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4.7k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
7.1 years ago array chip ▴ 420
2
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4
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3.4k
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DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
7.4 years ago Jane Merlevede ▴ 90
0
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2
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5.4k
views
DESeq2: how to interpret the heatmap clustering samples
deseq2 rlog transformation heatmap scale
7.7 years ago lina.faller ▴ 10
1
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1
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771
views
deseq2 rlog trasformation
deseq2 rlog transformation
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 40
2
votes
2
replies
1.3k
views
rlog transformation for Time-course data
deseq2 rlog transformation timecourse rnaseq
updated 8.2 years ago by 43k • written 8.2 years ago by • 0
0
votes
3
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1.8k
views
rlog transformation using DESeq2
rlog transformation deseq2
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 60
6
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4
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4.1k
views
regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog transformation vst variancestabilizingtransformation rlog
updated 8.4 years ago by 43k • written 8.4 years ago by • 0
0
votes
3
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1.5k
views
Variance estimation with DESeq2 and rLog transformation.
deseq2 rlog transformation
updated 8.4 years ago by ★ 13k • written 8.4 years ago by • 0
0
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4
replies
1.4k
views
rlog fast=TRUE not correct?
deseq2 rlog transformation vst
8.5 years ago ldetorrente ▴ 10
2
votes
2
replies
3.5k
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DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
8.6 years ago Shobana Sekar ▴ 20
0
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3
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7.7k
views
What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation
8.8 years ago lanhuong ▴ 20
0
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12
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12k
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
9.2 years ago sunil.mangalam • 0
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Answer: Fold change calculation in Diffbind vs. DESEQ2?
Fold change calculation in Diffbind vs. DESEQ2?
FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
Answer: FeatureCounts Output Counts at Exon Level Using Default Settings, want gene leve
Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?
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